The volumetric annotations of https://doi.org/10.5281/zenodo.3986502, https://doi.org/10.5281/zenodo.3986506, https://doi.org/10.5281/zenodo.3986508 and https://doi.org/10.5281/zenodo.3986504 used in the Stacked Dense Denoise-Segmentation Network. For the annotation the TomoPhantom software was used (https://doi.org/10.5281/zenodo.2546856). We acknowledge Diamond Light Source for the time on I13-2 under proposal mt9396.